Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MMNRVVLVGRLTKDPELRYTPAGVAVATFTLAVN-RTFTNQQGER---EADFINCVVWRKPAENVANFLKKGSMAGVDGRVQTRNYEGNDGKRVYVTEIVAESVQFLEPRNSNGGGGNNYQSGNNNNNYNSGGNNFGQAPTNNGGFGQDQQQSQNQNYQSTNNDPFASDGKPIDISDDDLPF
3AFP Chain:B ((7-106))
----ITIVGNLTADPELRFTSSGAAVVNFTVASTPRI---QSGEWKDGEALFLRCNIWREAAENVAESLTRGARVIVTGRLKQRS-ETREGEKRTVVEVEVDEI------------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3AFP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -46060 for 565 contacts (-81.5/contact) +
2D Compatibility (PS) -10128 + (NN) -3793 + (LL) -744
1D Compatibility (HY) -4800 + (ID) 2050
Total energy: -67575.0 ( -119.60 by residue)
QMean score : 0.619
(partial model without unconserved sides chains):
PDB file :
Tito_3AFP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3AFP-query.scw
PDB file :
Tito_Scwrl_3AFP.pdb
: