Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ----------------MEKMIQTIILYSVFAVGFLYLLHF----------TLRKLENILTS--FFYEVSQDQSLEKESLLRRLKRQKVATTQEEQKNRQLAIESEQKEVLFLEEIDQLIAQNKSYEQQLQAWENEQPKQIIEVP---TFETTPHAPYKSL--SSYINEIFQQVFIESEEDEARLFTEAIREFDALV----------------------RTEKIRCALPYKVILHLFEMY-SPEQLHLFAQSFQRYSERSSKLPVKQIYQS-SYLSPEQK--LKVMQEEGTLDELDAEFIQ--FLFYMMTHYSYR-QTRNLYRNFLEV-YNIHFYRGLICIHVASKGSANHFEKLWQPAHRSYKIEYQVQKELIGGVIIQYGSKSIDMSYQELIKR-----STEKMEAEVKL |
| 4NY2 Chain:A ((5-408)) | PKGTIYLTFDDGPVNASVEVIKVLNQGGVKATFYFNAWHLDGIGDENEDRALEALKLALDSGHIVGNHSYDHMIHN-----CVEEFGPTSGADCNATGNHQIHSYQDPVRDAASFEQNLITLEKYLPTIRSYPNYKGYELARLPYTNGWRVTKHFQADGLCATSDNLKPWEPGYVCDPANPSNSVKASIQVQNILANQGYQTHGWDVDWAPENWGIPMPANSLTEAVPFLAYVDKALNSCSPTTIEPINSKTQEFPCGTPLHADKVIVLTHDFLFEDGKRGMGATQNLPKLAEFIRIAKEAGYVFDTMDNYTPRWSVGKTYQAGEYVLYQGVVYKAVISHTAQQDWAPSSTSSLW--TNADPATNWTLNVSYEQGDIVNYKGKRYLVSVPHVSQQDWTPDTQNTLFTALEL |
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General information:
TITO was launched using:
| RESULT:
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Template: 4NY2.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -2649 for 2417 contacts (-1.1/contact) +
2D Compatibility (PS) -34981 + (NN) -6313 + (LL) 508
1D Compatibility (HY) -7200 + (ID) 2650
Total energy: -53285.0 ( -22.05 by residue)
QMean score : 0.098
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