Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPKNLYNYQEFIRLSHEGKIAYEQIDVPKNASLLTEKIDIDNHIYLVVDGYIALILNDGSQNSKIYSIQGKGTFLNYFTLLDQS--NNHFNFKTLSGCSLYKYSKADMEYFLSMFPENFGFQFFIMKNQTTHVYFKS-LMASSPASEKLKTTFSNMALLHGVLSDDGTVILPQAIKTSHLLSYSNLSKSCFYKDLQYLKTTNQIEKKEKCWIIHDQALYTMIQNGQTSF
3LA7 Chain:A ((32-234))
----------VFRQMATGAFPPVVETFERNKTIFFPGDPA-ERVYFLLKGAVKLSRVYEAGEEITVALLRENSVFGVLSLLTGNKSDRFYHAVAFTPVELLSAPIEQVEQALKENPELSMLMLRGLSSRILQTEMMIETLAHRDMGSRLVSFLLILCRDFGVPCADG-ITIDLKLSHQAIAEAIGSTRVTVTRLLGDLREKKMISIHKKKITVHK--------------
General information:
TITO was launched using:
RESULT:
Template:
3LA7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -108878 for 1521 contacts (-71.6/contact) +
2D Compatibility (PS) -20529 + (NN) -544 + (LL) 1672
1D Compatibility (HY) -5600 + (ID) 1200
Total energy: -135079.0 ( -88.81 by residue)
QMean score : 0.422
(partial model without unconserved sides chains):
PDB file :
Tito_3LA7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3LA7-query.scw
PDB file :
Tito_Scwrl_3LA7.pdb
: