Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | VGLNRFMRAMMVVFIT-ANCITINPDIIFAATDSEDSSLNTDEWEEEKTEEQPSEVNTGPRY-ETAREVSSRDIKELEKSNK-VRNTNKADLIAMLKEKAEKGPNINNNNSEQTENAAINEEA-SGADRPAIQVERRHPGLPSDSAAEIKKRRKAIASSDSELESLTYPDKPTKVNKKKVAKESVADASESDLDSSMQSADESSPQPLKANQQPFFPKVFKKIKDAGKWVRDKIDENPEVKKAIVDKSAGLIDQLLTKKKSEEVNASDFPPPPTDEELRLALPETPMLLGFNAPATSEPSSFE-----FPPPPTDEELRLALPETPMLLGFNAPATSEPSSFEFPPPPTEDELEIIRETASSLDSSFTRGDLASLRNAINRHSQ-NFSDFP-PIPTEEELNGRGGRPTSEEFSSLNSGDFTDDEN-SETTEEEIDRLADLRDRGTGKHSRN-AGFLPLNPFASSPVP-SLSPKVSKISAPALISDITKKTPFKNPSQPLNVFNKKTTTK-TVTKKPTP-VKTAPKLAELPATKPQETVLRENKTPFIEKQAETNKQSINMPSLPVIQKEATESDKEEMKPQTEEKMVEESESANNANGKNRSAGIEEGKLIAKSAEDEKAKEEPGNHTTLILA-MLAI-GVFSLGAFIKIIQLRKNN- |
| 4YCZ Chain:B ((66-928)) | -SEYRYAALAKDAYQQMGTAPVTEPPQVILGTEDLLSRLYDEK-------------------MDDTLATAAAQLAALWREHVDETPFEKANYLANLALQIH-------HPLPQTLFRWLNEYHMYGSQVDDILRHRPSPACHSLFWQAVFIALK-VGDAARLLDQAGWGHVYAYVNVQRAVDETIAVL-------------ESCPTLFRVRARGLLEHLRRFAEG------WEIYENLNIVFDIVLGQQGAI----LEAAQDWLEATVGLANSESYLDRLA----------RAFHTAVESDFVEIGMACVFEDNIKGVIGLLRGWSLPIAAAVAEIASLGKWLEVDGIKDSTLVQYAQALADYEGLSSVQDRDGWELSISVLGRMPERSEEMVRDLVEHLVQQLHVDSNATVDRLW--FLLNELGMIEFAEDTTETYGDILARDSHRYGEAMWYYALAHRPNKVREVMNLLTSYSLIQPPANDLD---DYLYKLLNDRKNTLEQCASQDMEAAELLGKMLSGYASLRQFYDIRPHATPLSRRKQAATALISVIASSDDEDFLLALLGEALVFVSDPTL--DQIDVLLKAIEDLQAVGSRVYNACDEFLQLVLASAPGGSSLVASQLQRSLSGTGGEDIMRRLRLGLAKDLAGLWLAEA |
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General information:
TITO was launched using:
| RESULT:
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Template: 4YCZ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 301608 for 3844 contacts (78.5/contact) +
2D Compatibility (PS) -57247 + (NN) 8559 + (LL) 2824
1D Compatibility (HY) 15600 + (ID) 1850
Total energy: 269494.0 ( 70.11 by residue)
QMean score : 0.085
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