Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKAFLSIGTNIGERLENLNDALRGLAASNQINITNVSSVYETDAVGYEDQAAFLNIAVEIETDFPPIDLLDFCLALELELGRVRLFKWGPRLIDIDVLLYDDVKTDTEKLKIPHPYMKERAFVMIPLIEISPEKSNLVENPALLEEQGVRKIKNQVNW
4AD6 Chain:B ((4-140))
MIQAYLGLGSNIGDRESQLNDAIKILNEYDGISVSNISPIYETAPVGYTEQPNFLNLCVEIQTTLTVLQLLECCLKTEECLHRIRKERWGPRTLDVDILLYGEEMIDLPKLSVPHPRMNERAFVLIPLNDIA---ANVVE-------------------
General information:
TITO was launched using:
RESULT:
Template:
4AD6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -89568 for 1038 contacts (-86.3/contact) +
2D Compatibility (PS) -14501 + (NN) -3734 + (LL) 1392
1D Compatibility (HY) -15200 + (ID) 3300
Total energy: -124911.0 ( -120.34 by residue)
QMean score : 0.418
(partial model without unconserved sides chains):
PDB file :
Tito_4AD6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4AD6-query.scw
PDB file :
Tito_Scwrl_4AD6.pdb
: