Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKRNYHVKFLNEKDVELAEAVCAASEDYYLIEQDKSASKSDALKIITEIP-D-----GKTRFDKFVLAVLDENEKPIGLVDIVSDYP-----RKGRWFIGLLLLTPDARHNGLGKVLHQTIKEWASDGGADSLALGVLAENEKGRGFFEHLGYTKEETKQASYGGKEQEVSIFTLAIK
1TIQ Chain:A ((2-171))
---SVKMKKCSREDLQTLQQLSIETFNDTF---KEQNSPENMKAYLESAFNTEQLEKELSNMSSQFFFIY-FDHEIAGYVKVNIDDAQSEEMGAESLEIERIYIKNSFQKHGLGKHLLNKAIEIALERNKKNIWLGVWEKNENAIAFYKKMGFVQTGAHSFYMGDEEQTDLIMAKTL-
General information:
TITO was launched using:
RESULT:
Template:
1TIQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -59374 for 1126 contacts (-52.7/contact) +
2D Compatibility (PS) -17310 + (NN) -7864 + (LL) 788
1D Compatibility (HY) -7600 + (ID) 1250
Total energy: -92610.0 ( -82.25 by residue)
QMean score : 0.547
(partial model without unconserved sides chains):
PDB file :
Tito_1TIQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1TIQ-query.scw
PDB file :
Tito_Scwrl_1TIQ.pdb
: