Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRAELAVYFIAGTQDIVRGTLPSVLEEALKGGITCFQYREKGAGSLQTASERKEMALECQKLCAKYQVPFIINDDVALALEIGADGIHVGQTDEAIRQVIASCSGKMKIGLSVHSVSEAKEAERLGAVDYIGVGPIFPTISKADAEPVSGTAILEEIRRAGITIPIVGIGGINETNSAEVLTAGADGVSVISAITQSDDCHSVIKQLKNPGSPS
1G4P Chain:B ((13-216))
MKELLSVYFIMGSNN-TKADPVTVVQKALKGGATLYQFREKGGDAL-TGEARIKFAEKAQAACREAGVPFIVNDDVELALNLKADGIHIGQEDANAKEVRAAI-GDMILGVAAHTMSEVKQAEEDGA-DYVGLGPIYP-------RAVQGVSLIEAVRRQGISIPIVGIGGITIDNAAPVIQAGADGVSMISAISQAEDPESAARKFR------
General information:
TITO was launched using:
RESULT:
Template:
1G4P.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -145278 for 1685 contacts (-86.2/contact) +
2D Compatibility (PS) -22042 + (NN) -14268 + (LL) 404
1D Compatibility (HY) -15600 + (ID) 4850
Total energy: -201634.0 ( -119.66 by residue)
QMean score : 0.689
(partial model without unconserved sides chains):
PDB file :
Tito_1G4P.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1G4P-query.scw
PDB file :
Tito_Scwrl_1G4P.pdb
: