Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRQYMKMVRPFDFVIIILLILGSFLPLILFSVAEAKHVGDDVVAIISQDGKVIREIPLTGHKGNEQFTIKGKGAQYNLMEVDGERIRIKEDNSPDQVGVKMGWKSKAGDTIVCLPHKVFVEIKSTNKKSKDPDTDLIVPN
1M1H Chain:A ((51-130))
----------------------------------------EEKVVIRAQGKEKYRLSLKGNAR--DISVLG-KKGVTTFRIENGEVKVVESVEG-DTCVNAPPISKPGQKITCKENKTEAKIVL----------------
General information:
TITO was launched using:
RESULT:
Template:
1M1H.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -28216 for 599 contacts (-47.1/contact) +
2D Compatibility (PS) -8993 + (NN) -5332 + (LL) 4324
1D Compatibility (HY) -800 + (ID) 750
Total energy: -39767.0 ( -66.39 by residue)
QMean score : 0.611
(partial model without unconserved sides chains):
PDB file :
Tito_1M1H.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1M1H-query.scw
PDB file :
Tito_Scwrl_1M1H.pdb
: