Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKRKIIAVTACATGVAHTYMAAQALKKGAKKMGNL-IKVETQGATGIENELTEKDVNIGEVVIFAVDTKVRNKERFDGKVVLEVPVSAPIKDAEKVINAALALIDEK
1VKR Chain:A ((377-451))
-VRKII--VACDAGMGSSAMGAGVLRKKIQDAGLSQISVTNSAINNLP--------PDVDLVITHRDLTERAMRQVPQAQHISLTN---------------------
General information:
TITO was launched using:
RESULT:
Template:
1VKR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -28128 for 520 contacts (-54.1/contact) +
2D Compatibility (PS) -8448 + (NN) -4669 + (LL) 2956
1D Compatibility (HY) -2000 + (ID) 900
Total energy: -41189.0 ( -79.21 by residue)
QMean score : 0.392
(partial model without unconserved sides chains):
PDB file :
Tito_1VKR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VKR-query.scw
PDB file :
Tito_Scwrl_1VKR.pdb
: