Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAGKMKLFSVTSERPLATKIADYLDIPLCEVELQKFSDGEVKINIEESIRGTNAYVVQSMNSNVNERLMELLIMVDALKRASVHSINIIMPYYGYARQDRKARS-REPITAKLMANLIQRAGANRLITVDLHAAQIQGFFNIPIDHLSAIP-LIGDYLIENYGEKDVVVVAPDHSGVVRARRIADRLNAPIAILNRKPRPHEDEIMSVIGDVKGKVAIVVDDIIDTGVRATTSADILLEKGAVEVIACATHSVMAGNATERLQNSNIKEVITSDSIDL-PEDKQFDKLTTISIGRILGRAIEGVQENRSLHPLF
3DAH Chain:B ((8-316))
----LMVFTGNANPALAQEVVKILGIPLGKAMVSRFSDGEIQVEIQENVRGKDVFVLQSTCAPTNDNLMELMIMVDALKRASAGRITAAIPYFGYARQDRRPRSARVAISAKVVANMLEIAGVERIITMDLHADQIQGFFDIPVDNIYATPILLGDLRKQNY--PDLLVVSPDVGGVVRARALAKQLNCDLA----------------IGEVEGRTCVIMDDMVDTAGTLCKAAQVLKERGAKQVFAYATHPVLSGGAADRIAASALDELVVTDTIPLSAESLACPKIRALSSAGLLAETFSRIRRGDSVMSLF
General information:
TITO was launched using:
RESULT:
Template:
3DAH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -245259 for 2418 contacts (-101.4/contact) +
2D Compatibility (PS) -32016 + (NN) -14321 + (LL) 1212
1D Compatibility (HY) -29200 + (ID) 6300
Total energy: -325884.0 ( -134.77 by residue)
QMean score : 0.646
(partial model without unconserved sides chains):
PDB file :
Tito_3DAH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3DAH-query.scw
PDB file :
Tito_Scwrl_3DAH.pdb
: