Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEQILFIQTGFGVDVHGQNITKAAERAVRNAIF--TNSMPGIQGLLPDGDL----QNMVVNIKLALPCDADQLDEDTIRAIIPYGTVTIEKMAGGMMTTSGI--------FLEDKEDKNDLMYIVNASVETGY
3GXV Chain:A ((1-122))
-----------MDHLKHLQQLQNIERIVLSGIVLANHKIEEVHSVLEPSDFYYPPNGLFFEIALKLHEEDCPIDENFIRQKMPKDKQIKEEDLVAIFAASPIDNIEAYVEEIKNASIKRKLFGLANTIREQAH
General information:
TITO was launched using:
RESULT:
Template:
3GXV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -14083 for 668 contacts (-21.1/contact) +
2D Compatibility (PS) -11940 + (NN) -7085 + (LL) 1280
1D Compatibility (HY) -4800 + (ID) 1050
Total energy: -37678.0 ( -56.40 by residue)
QMean score : -0.021
(partial model without unconserved sides chains):
PDB file :
Tito_3GXV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GXV-query.scw
PDB file :
Tito_Scwrl_3GXV.pdb
: