Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKWEEKRDMVKIATWYYHYGWTQAQIAKKIGISRSIISKTLQRAKDLGIVEIFIKDETYYTVDLEQKLEEKFGLEEAIVVATHDMSEEEALNFLAKEAAYTLSKRIAKVKTLGISWGKTIRKFANEFPFIPHKDLTIIPLIGGMGSSDIDLHSNQICYDLKKKMKCHSKYLYAPALVEDTEMKTDLSKNKYISEVLEEGKTVDMAIVGVSSPYNHSTMEEIGYINSEDIEELRYKD-VVGDINS-RFFTADGKEAKTEINTHVIGLSLEELKNIPTVVALANGLQKKEALVAALNAGLIDVIVITDRMAEYILQKND |
3KV1 Chain:A ((9-260)) | ------------------------------------------------------------SVQLEQKLVEKFNLKRALISLDQPNTNEQRKQVAALVSSY-LNNNLQEGMAVAVGQGQNVAAVADHAGIVTQRNARFVSAIGGTH----IINADHICRRLAKKYGGSSETLYAPAYVNDPSLRSAFMEHATIKETLSQARKAEFALVGIGDMDENSHMVKLGFFTPKEFVEARLNDGIVGDIGGFDFFKLDGTDADTLMRGRVIGLEMEDLRQIPNVVAMASESRKALSIMGALRTGVIDVLATSVSCAMALL---- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3KV1.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -139822 for 2218 contacts (-63.0/contact) +
2D Compatibility (PS) -27380 + (NN) -11034 + (LL) 5788
1D Compatibility (HY) -18400 + (ID) 3800
Total energy: -194648.0 ( -87.76 by residue)
QMean score : 0.526
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