Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LLTKRIIPCLDVTAGRVVKGVNFVSLTDVGDPVEIAKAYNEAGADELVFLDITATVELRQTMIDVVERTAEQVFIPLTVGGGISSVSDMKELLQAGADKISLNSAAIKRPELIQEGAAKFGNQCIVVAIDAKWNGTNWSVFTRGGRNDTGLDAIEWAKKAVQLGAGEILLTSMDGDGTKNGYDIPLTKAISEAVSVPVIASGGCGNAAHMVEVFEKTKATAALAASIFHYGELSIKNVKTTLLEKGVNIRP
3ZR4 Chain:C ((1-249))
MLAKRIIACLDVKDGRVVKG---------GDPVELGKFYSEIGIDELVFLDITASVEKRKTMLELVEKVAEQIDIPFTVGGGIHDFETASELILRGADKVSINTAAVENPSLITQIAQTFGSQAVVVAIDAKRVDGEFMVFTYSGKKNTGILLRDWVVEVEKRGAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEA-FLAGADAALAASVFHFREIDVRELKEYLKKHGVNVR-
General information:
TITO was launched using:
RESULT:
Template:
3ZR4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -137378 for 2073 contacts (-66.3/contact) +
2D Compatibility (PS) -26467 + (NN) -12170 + (LL) 744
1D Compatibility (HY) -21600 + (ID) 6250
Total energy: -203121.0 ( -97.98 by residue)
QMean score : 0.664
(partial model without unconserved sides chains):
PDB file :
Tito_3ZR4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3ZR4-query.scw
PDB file :
Tito_Scwrl_3ZR4.pdb
: