Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIVIIDYDTGNTKSISKALDFIGLQNKI--SSDATEISQADGVILPGVGAYPEAMKELTRRGLNKTLKEIAAGGKPILGVCLGMQLLLESSNEHSFTNGLGLIPGHVEKLPEDPEFAVPHMGWNQLQIKRATPLTKQLDG----EYVYYVHSYYA--NCPEEYIIATSGYSI--------EVPGMINKGNIYGAQFHPEKSGQIGLEILKGFKEVTYSCKSSQQ
1JVN Chain:B ((6-229))
VVHVIDVESGNLQSLTNAIEHLGYEVQLVKSPKDFNISGTSRLILPGVGNYGHFVDNLFNRGFEKPIREYIESGKPIMGI-VGLQALFAGSVESPKSTGLNYIDFKLSRF-DDSEKPVPEIGWNS-----CIPSENLFFGLDPYKRYYFVHSFAAILNSEKKKNLENDGWKIAKAKYGSEEFIAAVNKNNIFATQFHPEKSGKAGLNVIENF------------
General information:
TITO was launched using:
RESULT:
Template:
1JVN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -90009 for 1467 contacts (-61.4/contact) +
2D Compatibility (PS) -20685 + (NN) -7979 + (LL) 1360
1D Compatibility (HY) -16400 + (ID) 3400
Total energy: -137113.0 ( -93.46 by residue)
QMean score : 0.502
(partial model without unconserved sides chains):
PDB file :
Tito_1JVN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JVN-query.scw
PDB file :
Tito_Scwrl_1JVN.pdb
: