Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | VIYLDNEDVLDQAYNFAMEEYALRSLDENETYFMFYRMKPTIIVGKNQNTLEEINHPFVKDHHIDVLRRLSGGGAVYNDEGNISFSMI-TKDDGNSFQNFAKFTEPVIRALRKLGVNAELSGRNDIEV----------NGKKISGNAQFATKGRLYSHGTLLFDVDLSMLEKALQVDPEKYLSKGVKSVRSRVTTIREHLAEDIDILTFKQILLESIFETK--DIPRYTFTEADKQGIEKLRTERYRNWDWTYGKSPKATIKRKKRFPAGTIEFQVSLEKGQVKEATIYGDFFGTEDVAELAEKIIGCRFERKSIQNAWQEINAKDYFGGIEKEAILDMLFE |
| 2C8M Chain:B ((38-255)) | ----------------------------------FYRHDRSVIIGYFQVAEEEVDLDYMKKNGIMLARRYTGGGAVYHDLGDLNFSVVRSSDDMDITSMFRTMNEAVVNSLRILGLDARPGELNDVSIPVNKKTDIMAGEKKIMGAAGAMRKGAKLWHAAMLVHTDLDMLSAVL------------KSTRERVANVTDFV--DVSIDEVRNALIRGFSETLHIDFREDTITEKEESLARELFDKKYSTEEWNMG---------------------------------------------------------------------------------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 2C8M.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -85001 for 1353 contacts (-62.8/contact) +
2D Compatibility (PS) -20431 + (NN) -6597 + (LL) 10528
1D Compatibility (HY) -14000 + (ID) 3300
Total energy: -118801.0 ( -87.81 by residue)
QMean score : 0.547
|
|
|