Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKNILLICGSGA-SSGFMAAAIRKAAKKRGEQ-VTVKAASESQIDERINEIDYLLIGPHLAYMLDDLKQKVADKDVLVSIIPQATYGTLNGEKALDLILNMEG
1VKR Chain:A ((378-466))
-RKIIVACDAGMGSSAMGAGVLRKKIQDAGLSQISVTNSAINNLP---PDVDLVITHRDLTERAM---RQV--PQAQHISLTN-FLDSGLYTSLTERLV----
General information:
TITO was launched using:
RESULT:
Template:
1VKR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -71632 for 634 contacts (-113.0/contact) +
2D Compatibility (PS) -10012 + (NN) -6698 + (LL) 1052
1D Compatibility (HY) -2400 + (ID) 650
Total energy: -90340.0 ( -142.49 by residue)
QMean score : 0.592
(partial model without unconserved sides chains):
PDB file :
Tito_1VKR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VKR-query.scw
PDB file :
Tito_Scwrl_1VKR.pdb
: