Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQLITTENKLAGSKKALEIIEKGITSGEVNTLGLATGSTPETLYAELVK----SDVDTKNVTTTNLDEYVGLAASDPNSYHYYMNDLLFSKKAFKES--FLPNGEATDAEAECARYEEIL-SEHPIDIQVLGIGTNGHIGFNEPGTSFDSITHKVVLTDSTREANKRFFEREEDVPTHAYSMGIKSIMNAKKIILLAFGENKAQAIKETIKGPVDVNCPASVLQNHPDVTVILDNEAASLL
2BKV Chain:B ((32-240))
-------------------------------LGLATGGTPEGTYRQLIRLHQTENLSFQNITTVNLDEYAGLSSDDPNSYHFYMNDRFFQHIDSKPSRHFIPNGNADDLEAECRRYEQLVDSLGDTDIQLLGIGRNGHIGFNEPGTSFKSRTHVVTLNEQTRQANARYFPSIDSVPKKALTMGIQTILSSKRILLLISGKSKAEAVRKLLEGNISEDFPASALHLHSDVTVLIDREAASL-
General information:
TITO was launched using:
RESULT:
Template:
2BKV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -81482 for 1623 contacts (-50.2/contact) +
2D Compatibility (PS) -22285 + (NN) -15837 + (LL) 2476
1D Compatibility (HY) -17200 + (ID) 5500
Total energy: -139828.0 ( -86.15 by residue)
QMean score : 0.557
(partial model without unconserved sides chains):
PDB file :
Tito_2BKV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2BKV-query.scw
PDB file :
Tito_Scwrl_2BKV.pdb
: