Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNLSLEGKTYVVMGVANKRSIAWAIARSLNEAGAKLVFTYADDRAKKSITELVPSLSEVNQNPLILACDVTSEEAITETFETIKDKAGKLSGLAHCIAFANKDFLTGDYLEVDRKSFLQAHEISAYSFTAVARALKHLEMLTEDASLLTLTYLGGERVVENYNIMGVAKASLDASVRYLAMDLGAIGVRVNAISAGPIRTVSARGVSGFSDSISLVEERAPLKRATQAEEVGDTAYYLFSNLSRGVTGEVIHVDSGYHIIGF
3OJF Chain:D ((4-257))
----LQGKTFVVMGVANQRSIAWGIARSLHNAGAKLIFTYAGERLERNVRELADTLE--GQESLVLPCDVTNDEELTACFETIKQEVGTIHGVAHCIAFANRDDLKGEFVDTSRDGFLLAQNISAFSLTAVAREAK--KVMTEGGNILTLTYLGGERVVKNYNVMGVAKASLEASVKYLANDLGQHGIRVNAISAGPIRTLSAKGVGDFNSILREIEERAPLRRTTTQEEVGDTAVFLFSDLARGVTGENIHVDSGYHILGL
General information:
TITO was launched using:
RESULT:
Template:
3OJF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -191686 for 2176 contacts (-88.1/contact) +
2D Compatibility (PS) -27500 + (NN) -5035 + (LL) 792
1D Compatibility (HY) -28800 + (ID) 8100
Total energy: -260329.0 ( -119.64 by residue)
QMean score : 0.625
(partial model without unconserved sides chains):
PDB file :
Tito_3OJF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3OJF-query.scw
PDB file :
Tito_Scwrl_3OJF.pdb
: