Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEQMDAHQIISFIQNSKKATPVKVYLKGDLEKIDFPSDVKTFITGNAGTVFGEWAVVEPLLEANKANIEDYVIENDRRNSAIPLLDMKNINARIEPGAVIRDQVTIGDNAVIMMGASINIGSVIGDGTMIDMNVVLGGRATVGKNCHIGAGSVLAGVVEPPSAQPVIVEDNVVVGANVVVLEGVRIGEGAVVAAGAIVTKDVAPGTVVAGIPARELKKLDAKTASKTEIMQELRQL
3R8Y Chain:C ((17-217))
----------------EKKTPVKVYIKGDLKEVTFPETVQAFVNKKSGVLFGEWSEIKTILDENSKYIVDYVVENDRRNSAIPMLDLKGIKARIEPGAIIRDHVEIGDNAVIMMNATINIGAVIGEGSMIDMNAVLGGRATVGKNCHVGAGAVLAGVIEPPSAKPVIVEDDVVIGANVVVLEGVTVGKGAVVAAGAVVTEDVPPYTVVAGTPARVIK-------------------
General information:
TITO was launched using:
RESULT:
Template:
3R8Y.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -205603 for 1585 contacts (-129.7/contact) +
2D Compatibility (PS) -22564 + (NN) -10909 + (LL) 3568
1D Compatibility (HY) -26800 + (ID) 7050
Total energy: -269358.0 ( -169.94 by residue)
QMean score : 0.670
(partial model without unconserved sides chains):
PDB file :
Tito_3R8Y.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3R8Y-query.scw
PDB file :
Tito_Scwrl_3R8Y.pdb
: