Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEQKTFIKVTCSILTISD--TRNLDTDTSGQLIQSALETAGHEVISRVVVPDDVTLIKQKINELAANGSFCLITNGGTGIARRDVTYEALFATIQQEIPGFGEIFRMLSYEEVGSRAMVSRAFAGF---SESGLLLFALPGSSNACQLAVQKLIIPELPHLIAERQK
4LHB Chain:C ((29-181))
---KTF---KFGVITVSDKGAKGEREDKSGPLIIEELSKLGEHVYYKIV-PDDKIEVLIALFEAIKSGADVVVTTGGTGITRRDITIESIKPLFDKEL-SFGEVFRAKSYEEVGYATVLTRATAGIIRGQERIVVVFSLPGSVNAVKTGLE-IIKSEVFHIL-----
General information:
TITO was launched using:
RESULT:
Template:
4LHB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -123340 for 1187 contacts (-103.9/contact) +
2D Compatibility (PS) -15905 + (NN) -5371 + (LL) 1540
1D Compatibility (HY) -12800 + (ID) 2900
Total energy: -158776.0 ( -133.76 by residue)
QMean score : 0.589
(partial model without unconserved sides chains):
PDB file :
Tito_4LHB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4LHB-query.scw
PDB file :
Tito_Scwrl_4LHB.pdb
: