Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceLSKIPVIVIVGPTAVGKTSLSIELAKKLDGEIISGDSMQVYRGLDIGTAKITPEEMDEIKHYLIDVTDPSEPFTAAKFQTETRKWIETIHQAGKLPIIVGGTGLYIQSVFYDYDFGNVSEDKAYRAELEQLNKT---LLWQMLEQQDPESAAQIHENNKRRVIRALEVMHLTGKPFSEYQVHNVLNDTYKPLFLGLDLDRALLYERINQRVNLMFEEGLVTEAKKLYDQHLVD--VPAVCG------IGYKELFPYFEGKSS--LEEAKELIQKNSRHFAKRQLTWFRNRMEIDWIQAGVSTTEAEALNKAETFLSVK
3EPK Chain:B ((4-316))-----VIVIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQVYKDIPIITNKHPLQEREGIPHHVMNHVDWSEEYYSHRFETECMNAIEDIHRRGKIPIVVGGTHYYLQTLFNKRVDTKSSERKLTRKQLDILESTDPDVIYNTLVKCDPDIATKYHPNDYRRVQRMLEIYYKTGKKPSETFNEQKITLKFDTLFLWLYSKPEPLFQRLDDRVDDMLERGALQEIKQLYEYYSQNKFTPEQCENGVWQVIGFKEFLPWLT----VKLEDCIERMKTRTRQYAKRQVKWIK-KMLIPDIKGDIYLLDATDLSQWDTNAS--


General information:
TITO was launched using:
RESULT:

Template: 3EPK.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -117051 for 2211 contacts (-52.9/contact) +
2D Compatibility (PS) -32167 + (NN) -18944 + (LL) 288
1D Compatibility (HY) -18400 + (ID) 5650
Total energy: -191924.0 ( -86.80 by residue)
QMean score : 0.427

(partial model without unconserved sides chains):
PDB file : Tito_3EPK.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3EPK-query.scw
PDB file : Tito_Scwrl_3EPK.pdb: