Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRNKKIPLRKCIITGERLPKG---ELLRIAYSKDGALTIDPTGKAPGRGFYIVKSVEACEKAKKK--------------NAIFHQLKMPEQESFYDELIAYVKSLEEPTNG
1WHX Chain:A ((212-322))
GSSGSSGRSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIGVFGAAPQKKDSQHEQPAEKAESGPSSG
General information:
TITO was launched using:
RESULT:
Template:
1WHX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -19795 for 508 contacts (-39.0/contact) +
2D Compatibility (PS) -10016 + (NN) -3511 + (LL) 0
1D Compatibility (HY) 3200 + (ID) 750
Total energy: -30872.0 ( -60.77 by residue)
QMean score : 0.405
(partial model without unconserved sides chains):
PDB file :
Tito_1WHX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1WHX-query.scw
PDB file :
Tito_Scwrl_1WHX.pdb
: