Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | VQQINWKKNVSFRSGSPAFTLLETILSITIILSISLLIPLFFQCYNKTIQLSNIDQTTEWQLFLIQTRLELEKATNIQIDGNKLSFSNGKDLIT----YSKYNDLVRRQVNGKGHEPLLTNVKDYQLIKKEKQLHLTVQDSNTQIYTSVFALPEVVSNP |
2K0Q Chain:A ((1-74)) | ---------------------------------------VDMSNVVKTYDLQDGSKVHVFKDGKMGMENKFGKSMNMP-EGKVMETRDGTKIIMKGNEIFRLDEALRKGHSEGG--------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2K0Q.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 2197 for 419 contacts (5.2/contact) +
2D Compatibility (PS) -7273 + (NN) 3053 + (LL) 6916
1D Compatibility (HY) -2000 + (ID) 500
Total energy: 2393.0 ( 5.71 by residue)
QMean score : 0.177
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