Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKNTKGKKITIIISIIILI-LVIATFSGYYYVKSQLEPKDEASKEKITVEIPAGSSISDISTILEDKKVINN-A-SIFSF----YVKYNNDTNLKAGNYELSPAMNTDQI---VKKMQEGKTVAP---AKLVIPEGYTLDQIADRIVAYQPKLKKADVLKTMDDP-EFVASMIKAYPETVT-NDVL--NKSIKHPLEGYLYPA-TY--TFKGTDVSAE-QIITEMVKATDVNIAKYRDELTKQKMSVHKFLTMSSIIEKEATENV---DRKMIASVFYNRLAKD-MRLQTDPTVLYALGEHKSKTTYKDL-EVDSPYNTYKNNGLPPGPISNSGDSS---MEAALYPEKSDY----------------LYFLANTKTGKVYFSKTLEEHNKLKEEHITKNN------- |
| 3B7F Chain:A ((16-393)) | SAPESGP-----------VMLLVATIKGAWFLAS------DPARRTWELRGPVFLG-HTIHHIVQDPREPERMLMAARTLGPTVFRSDDGGGNWTEATRPPAFNKAPGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRST--DHGASWEP------VAGFNDHPMR--RAWTGGEPDGPKMHSILVDPRDPKH-----LYIGMSSGGVFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHP--AAPDILYQQNHCGIYRMDRR---EGVWKRIGDAMPREVGDIGFPIVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGLPTDQAWLTVKRQAMTADAHAPVGVYFG--TTGGEIWASADEGEHWQCIASHLPHIYAVQSARP |
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General information:
TITO was launched using:
| RESULT:
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Template: 3B7F.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 37590 for 2322 contacts (16.2/contact) +
2D Compatibility (PS) -32782 + (NN) 1076 + (LL) 4240
1D Compatibility (HY) -4000 + (ID) 2550
Total energy: 3574.0 ( 1.54 by residue)
QMean score : 0.184
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