Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSGLTKIEIITRPNRFHLFQKELAKIGVSGLTVTKALGTGLEKGFIELYRGTK-KESNIHERMKIEIVVSTVPVEDVLRVVKETLRTGEPGDGKVFIYPLAEVVKISTGETGIDALQDKPSK
4USH Chain:C ((20-127))
-----RIEAIFRPWRLPFVIDTLSKYGIRGLTNTPVKGVG-------------FGPSNLVDKEKLDIVVSRAQVDAVVRLVAASAYTGEIGDGKIFVHPVAEVVRIRTAETGL---------
General information:
TITO was launched using:
RESULT:
Template:
4USH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -48834 for 564 contacts (-86.6/contact) +
2D Compatibility (PS) -10720 + (NN) -7555 + (LL) 1408
1D Compatibility (HY) -8000 + (ID) 2200
Total energy: -75901.0 ( -134.58 by residue)
QMean score : 0.630
(partial model without unconserved sides chains):
PDB file :
Tito_4USH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4USH-query.scw
PDB file :
Tito_Scwrl_4USH.pdb
: