Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LYDYIKGTVTTITPEYIVVEAGQIGYQIITGNPFSFQRL-EGTEAQVFLYQHVREDNISLFGFQTTEERYLFKKLLSVSGIGPKSALAIIASGDVVPLISAIESEDDVYLTKFPSVGKKTARQIILDLKGKLADVVASEIVYVAPENDMVAGLSPQLEEAVLALEALGYSTRELKKVIPK-LAKEADLTSDAYIKLALQLMTK
2H5X Chain:D ((5-194))
----VRGEVLEVALDHVVIEAAGVGYRV-NATPATLATLRQGTEARLITAMIVREDSMTLYGFPDGETRDLFLTLLSVSGVGPRLAMAALAVHDAPALRQVLADGNVAALTRVPGIGKRGAERMVLELRDKVG---------------AV--RSPVVE----ALVGLGFAAKQAEEATDTVLAANHDATTSSALRSALSLLGK
General information:
TITO was launched using:
RESULT:
Template:
2H5X.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -106061 for 1256 contacts (-84.4/contact) +
2D Compatibility (PS) -19097 + (NN) -7222 + (LL) 2236
1D Compatibility (HY) -10800 + (ID) 3100
Total energy: -144044.0 ( -114.68 by residue)
QMean score : 0.546
(partial model without unconserved sides chains):
PDB file :
Tito_2H5X.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2H5X-query.scw
PDB file :
Tito_Scwrl_2H5X.pdb
: