Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKNQFDRHRRLRKTKTMRDLVRETVLHTDDLIYPIFVKDGKEPKTEVVSMPGVFQYPLHELEEEMRVVESLGIKAVILFGI-PAEKDAV-GTQAYHDHGIIQEATRLIKKSFPKILVVADTCLCEFTDHGHCGVIEN-GEILNDESLELLKQTAVSQAAAGADIIAPSNMMDGFVQVIREGLDEAGFYDIPIMSYAVKYASAFYGPFRDAAGSAPQFGDRKSYQMDPANREEALREAKSDEQEGADFLIVKPSLSYLDIMRDVKNNTNLPVVAYNVSGEYAMVKAAAQNGWIDEEKIVIEMLTSMKRAGATLIITYFAKDVSKYLNK |
| 1W5Q Chain:B ((12-335)) | ----YTRLRRNRRDDFSRRLVRENVLTVDDLILPVFVLDGVNQRESIPSMPGVERLSIDQLLIEAEEWVALGIPALALFPVTPVEKKSLDAAEAYNPEGIAQRATRALRERFPELGIITDVCLCEFTTHGQCGILDDDGYVLNDVSIDVLVRQALSHAEAGAQVVAPSDMMDGRIGAIREALESAGHTNVRVMAYSAKYASAYYGPFR----------NRATYQMDPANSDEALHEVAADLAEGADMVMVKPGMPYLDIVRRVKDEFRAPTFVYQVSGEYAMHMGAIQNGWL-AESVILESLTAFKRAGADGILTYFAKQAAEQLRR |
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General information:
TITO was launched using:
| RESULT:
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Template: 1W5Q.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -200227 for 2614 contacts (-76.6/contact) +
2D Compatibility (PS) -34551 + (NN) -19367 + (LL) 332
1D Compatibility (HY) -27200 + (ID) 7550
Total energy: -288563.0 ( -110.39 by residue)
QMean score : 0.637
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