Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKHLFKLDPAKNLPTNDVTKLIHSGTDGFIIGGTDNVQIEAVQNLYELLVETDLPIFLEISNESMILPEADHFLIPVVLNTENSKWTHGLHKELIKEMGEFIPWKRVTSEGYVILNKDAKVAHLTEAKTDLTDEDIVAYARLAENIFHLPIFYVEYSGMYGDPEVVRKASAALSNTKFWYGGGIRSKEQAAEMAKYADTIIVGNIIYEDLEKALETATIFRKKTV
3VZY Chain:B ((8-226))
-KHVFKLDPNKDLPDEQLEILCESGTDAVIIGGSDGVTEDNVLRMMSKVRRFLVPCVLEVSAIEAIVPGFDLYFIPSVLNSKNADWIVGMHQKAMKEYGELMSMEEIVAEGYCIANPDCKAAALTEADADLNMDDIVAYARVSE-LLQLPIFYLEYSGVLGDIEAVKKTKAVLETSTLFYGGGIKDAETAKQYAEHADVIVVGNAVYEDFDRALKTVAAVK----
General information:
TITO was launched using:
RESULT:
Template:
3VZY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -149860 for 1877 contacts (-79.8/contact) +
2D Compatibility (PS) -23561 + (NN) -7020 + (LL) 500
1D Compatibility (HY) -22800 + (ID) 5000
Total energy: -207741.0 ( -110.68 by residue)
QMean score : 0.614
(partial model without unconserved sides chains):
PDB file :
Tito_3VZY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3VZY-query.scw
PDB file :
Tito_Scwrl_3VZY.pdb
: