Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKQEEIIIAAQKWMQSHFEKETTGHDWEHIKRVWHLSKQIQVTEG-GDKFAIELAALFHDYNDSKLTEDPLQ-ATEIITTWLREKEIPEDVISKIIRIIQAVSFKNGKNPIQASTIEEKIVQDADRLDAIGAIGIARTFTYGGAHNREIANRD-------------HPENTTLQHFYDKLLLIQTQLKTKTGRELAGEKQIIMQDFIHALEKELKI
2QGS Chain:A ((1-213))
MNSRMKIKKAYEYMKSFHQHDTTGHDIAHVERVYNNACYIAKRENITDTLVIELSSLLHDTVDSKLT--DEILAYDQLKQFLSTLDLSSEISQQVLYIIKHMS-------HVKLSIDGEIVRDADRLDAIGAIGIARTFQFSGHFGEPMWTETKLSNEELHTSLVEELDNSAIKHFYEKLFKLKDLMHTPTAKKLAEERHQFMIQYLKQFMSEWN-
General information:
TITO was launched using:
RESULT:
Template:
2QGS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -58212 for 1436 contacts (-40.5/contact) +
2D Compatibility (PS) -20602 + (NN) -7298 + (LL) 20
1D Compatibility (HY) -14800 + (ID) 3300
Total energy: -104192.0 ( -72.56 by residue)
QMean score : 0.433
(partial model without unconserved sides chains):
PDB file :
Tito_2QGS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2QGS-query.scw
PDB file :
Tito_Scwrl_2QGS.pdb
: