Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNKP--IIALDFQTYEEVETFLAKFSGETLSVKVGMELFYSNGPVIVEKIKQQNHEIFLDLKLHDIPNTVKSAMIGLAKLGVDMVNVHAAGGKKMMEAAKEGLEIGSPSGK-RPKIIAVTQLTSTSETDMQTEQLIKTSLLESVMHYSNLSKQAGLDGVVCSALEAEDIKQQNGADFLRVTPGIRLASDTADDQIRVVTPEKARLIGSSNIVVGRSITRANDPVAAYNQVLKEWNA
3UWQ Chain:B ((27-252))
--DPKVIVALDYDNLADALAFVDKIDPSTCRLKVGKEMFTLFGPDFVRELHKRGFSVFLDLKFHDIPNTCSKAVKAAAELGVWMVNVHASGGERMMAASREILE---PYGKERPLLIGVTVLTSMESADLQGIGIL-SAPQDHVLRLATLTKNAGLDGVVCSAQEASLLKQHLGREFKLVTPGIRPAGS----QRRIMTPAQAIASGSDYLVIGRPITQAAHP----EVVLEEINS
General information:
TITO was launched using:
RESULT:
Template:
3UWQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -83345 for 1772 contacts (-47.0/contact) +
2D Compatibility (PS) -24030 + (NN) -9727 + (LL) 812
1D Compatibility (HY) -18400 + (ID) 5150
Total energy: -139840.0 ( -78.92 by residue)
QMean score : 0.554
(partial model without unconserved sides chains):
PDB file :
Tito_3UWQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3UWQ-query.scw
PDB file :
Tito_Scwrl_3UWQ.pdb
: