Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNEAVKTLDGWFCLHDFRSIDWAAWRELNPGNQELMLNELSHFLSDMEITKNIGEGEHTIYSILGQKADLVFFTLRDSLEALNEVENRFNKLAIADYLLPTYSYISVVELSNYLASHMAGGDDPYQNKGVRARLYPALPPKKHICFYPMSKKRDGADNWYMLPMEERQQLIRDHGLIGRSYAGKVQQIIGGSIGFDDYEWGVTLFSDDALEFKRIVTEMRFDEASARYAEFGSFFIGNLLLSEQLSKLFTI
4WWS Chain:B ((9-253))
------TLDGWFCLHDFRSIDWAAWRELNPGNQELMLNELSHFLSDMEITKNIGEGEHTIYSILGQKADLVFFTLRDSLEALNEVENRFNKLAIADYLLPTYSYISVVELS-----------DPYQNKGVRARLYPALPPKKHICFYPMSKKRDGADNWYMLPMEERQQLIRDHGLIGRSYAGKVQQIIGGSIGFDDYEWGVTLFSDDALEFKRIVTEMRFDEASARYAEFGSFFIGNLLLSEQLSKLFTI
General information:
TITO was launched using:
RESULT:
Template:
4WWS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -128084 for 1747 contacts (-73.3/contact) +
2D Compatibility (PS) -25438 + (NN) -12490 + (LL) 912
1D Compatibility (HY) -36400 + (ID) 11700
Total energy: -213200.0 ( -122.04 by residue)
QMean score : 0.577
(partial model without unconserved sides chains):
PDB file :
Tito_4WWS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4WWS-query.scw
PDB file :
Tito_Scwrl_4WWS.pdb
: