Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MRKMAVISLVLLLFLVGCGKEEAAQKPEQKTDKEPKIVATTVAITEIMDKLDL--PLVGIPSSSKKLPKRYADVKETGSPMGPDLEIIRMLKPDMVLSTKTLE-ADLKSGFEGADLEADFLDF-TSIASMQTEIKNLGAKFDRIEEATKLNKDLTSDIDQVKSNVAKKKKPTVLILMGVPG-SYLVVTEHAYIGDLVKLAGGENVIKDQKVEYLASNTEYLQSANPDIILRAAHGMPAEVVKMFDEEFKTNDIWKHFDAVKNNRVYDLDENLFGMTASLNAPEALKEMEKMLYDN |
| 3MD9 Chain:A ((2-254)) | ---------------------------------AERIVTIGGDVTEIAYALGAGDEIVARDSTS-QQPQAAQKLPDVGYMRTLNAEGILAMKPTMLLVSELAQPSLVLTQIASSGVNVVTVPGQTTPESVAMKINAVATALHQTEKGQKLIEDYQQRLAAVNKTP---LPVKVLFVMSHGGLTPMAAGQNTAADAMIRAAGGSNAMQG-FSRYRPLSQEGVIASAPDLLLITTDGVKAL---GSSENIWKLPGMALTPAGKHKRLLVVDDMAL-LGFGLETPQVLAQLREKMEQM |
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General information:
TITO was launched using:
| RESULT:
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Template: 3MD9.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -101026 for 2133 contacts (-47.4/contact) +
2D Compatibility (PS) -26885 + (NN) -13838 + (LL) 3864
1D Compatibility (HY) -6400 + (ID) 2400
Total energy: -146685.0 ( -68.77 by residue)
QMean score : 0.479
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