Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LKNYKAYLIDLDGTMYRGAEVIPEAIIFIENLKRAGLPYLFVTNNSTKTPGQVAEHLTDMGIQAVSDDVFTTSQATVQFMMEQKREKTVYVIGERGIKQELTDNGFEITSSNPA-FVVVGLDREVDYEKFSKAALAVRGGAMFISTNGDAAIPTERGLLPGNGSITSVVSVATETAP-IFIGKPESIIMEQALAKLGVHKDEAIMVGDNYETDIMAGINYGMDTLIVHTGFTSKEAL----LTKEIQPTYAVTKLTDWEFN
4JDP Chain:B ((24-280))
MPDKKGYIIDIDGVIGKSVTPIPEGVEGVKKLKELGKKIIFVSNNSTRSRRILLERLRSFGLEVGEDEILVATYATARFIAREKPNAKVFTTGEEGLIEELRLAGLEIVDYDEAEYLVVGSNRKINFELMTKALRACLRGIRYIATNPDRIFPAEDGPIPGTGMIIGALYWMTGREPDVVVGKPSEVIMREALDILGLDAKDVAVVGDQIDVDVAAGKAIGAETVLVLTGVTTRENLDQMIERHGLKPDYVFNSLKD----
General information:
TITO was launched using:
RESULT:
Template:
4JDP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -150558 for 2214 contacts (-68.0/contact) +
2D Compatibility (PS) -27092 + (NN) -12885 + (LL) 312
1D Compatibility (HY) -18000 + (ID) 4250
Total energy: -212473.0 ( -95.97 by residue)
QMean score : 0.576
(partial model without unconserved sides chains):
PDB file :
Tito_4JDP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4JDP-query.scw
PDB file :
Tito_Scwrl_4JDP.pdb
: