Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSRIGKKTIVIPAGVTVTLNGSTATVKGPKGELVKEFNPEITIKIEGNEINVSRPTDNKNHRALHGTTRAILNNMVVGVSEGYEKKLELIGVGYRAQKQGDKLVLNVGYSHPVEFVAPKGVDIEVPANTQVIVKGYNKEHVGELAANIRAVRPPEPYKGKGIRYEGEHVRRKEGKTGK
1RL6 Chain:A ((7-170))
-------PIEIPAGVTVTVNGNTVTVKGPKGELTRTFHPDMTITVEGNVITVTRPSDEKHHRALHGTTRSLLANMVEGVSKGYEKALELVGVGYRASKQGKKLVLSVGYSHPVEIEPEEGLEIEVPSQTKIIVKGADKQRVGELAANIRAVRPPEPYKGKGIRYEGELVRL-------
General information:
TITO was launched using:
RESULT:
Template:
1RL6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -57030 for 1183 contacts (-48.2/contact) +
2D Compatibility (PS) -18488 + (NN) -11410 + (LL) 444
1D Compatibility (HY) -16400 + (ID) 5900
Total energy: -108784.0 ( -91.96 by residue)
QMean score : 0.601
(partial model without unconserved sides chains):
PDB file :
Tito_1RL6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1RL6-query.scw
PDB file :
Tito_Scwrl_1RL6.pdb
: