Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | VIRFFKIVTPILLSISLVACSSASGKTEKITAPIEKDRNLSMVVTTDVHYFAPSLTDNGKAFEKYVAAGDGKQLAYSDEITDAFLADVES--KKTDVLIISGDLTNNGEKTSHEELAKKLTQVEKNGTQVFVVPGNHDINNPWARKFEKDKQLPTDTISPTDFSKIYGDFGYEDAISSDEFSLSYLAAPSSKVWLLMLDTAIYKTNMQQGNPTTEGGLTAGTLDWIKESSALAKKNGAKLIPVLHHNLTDHNDVIQKGYTINYNQQVIDALTEG-AMDFSLSGHIHTQNIRSAKSTDGKEITDIVTNAL--------------SVFPHKYGNITYSAKNKNFTYQSQKLDMEAWAKAQGSTDENLLNFDQFDYETFYNSGYDKAMMDLMTDESYDKYNQADKEKMADTMGLNNMYFFAGTAPPKSDGMALWDSAPNSFLKDYVLSSSNPPKKSNDYYVSP |
| 3D03 Chain:A ((1-245)) | ---------------------------------------MLLAHISDTHFRSRGEKL--------------YGFIDVNAANADVVSQLNALRERPDAVVVSGDIVNCGRPEEYQVARQILGSL---NYPLYLIPGNHDDKALFLEY----------------LQPLCPQLGS------DANNMRCAVDD-FATRLLFIDSSRAGT--------SKGWLTDETISWLEAQLFEG--GDKPATIFMHHPPLPLGNAQMDPIACENGHRLLALVERFPSLTRIFCGHNHSLTMTQYR---QALI-STLPGTVHQVPYCHADTDPYYDLSPASCLMHRQVGE-------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3D03.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -100685 for 1910 contacts (-52.7/contact) +
2D Compatibility (PS) -24725 + (NN) -6749 + (LL) 9788
1D Compatibility (HY) -6800 + (ID) 1600
Total energy: -130771.0 ( -68.47 by residue)
QMean score : 0.433
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