Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDLVQFLKKGMVWVQSDIEKQEDLFQMVAESGKSEGYVTDDFLTRLTDREQTFPTGLKLDGYGVALPHTDPE---CVTEQFIAVITVKDGIPFKLMEDAGQTVEANLIFVLGLNEPHSQLAVLQQLMGTIQDKDNVAALLRAKDEDEVKQILETIAV
1A3A Chain:A ((4-147))
---LFKLGAENIFLGRKAATKEEAIRFAGEQLVKGGYVEPEYVQAMLDREKLTPTYL---GESIAVPHGTVEAKDRVLKTGVVFCQYPEGVRFGEEED----DIARLVIGIAARNN-EHIQVITSLTNALDDESVIERLAHTTSVDEVLELLAGR--
General information:
TITO was launched using:
RESULT:
Template:
1A3A.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -100071 for 1133 contacts (-88.3/contact) +
2D Compatibility (PS) -15116 + (NN) -5560 + (LL) 996
1D Compatibility (HY) -7600 + (ID) 1600
Total energy: -128951.0 ( -113.81 by residue)
QMean score : 0.417
(partial model without unconserved sides chains):
PDB file :
Tito_1A3A.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1A3A-query.scw
PDB file :
Tito_Scwrl_1A3A.pdb
: