Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNFNFFVRSGFIGLILLFVIQVLGIIRGLLIQSGFMDGSIDQTLLGTKLIIVPIIFFTISVIFFLLWFYKDYQKSRFPN
3TND Chain:B ((7-74))
HETTVFLSNRS---------QAVRLPKAVALPENVKRVEVIAV--GRTRIITPAGETWDEWFDGHSVSTDFMDNREQPG
General information:
TITO was launched using:
RESULT:
Template:
3TND.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -36242 for 289 contacts (-125.4/contact) +
2D Compatibility (PS) -7023 + (NN) 1195 + (LL) 1644
1D Compatibility (HY) 2400 + (ID) 350
Total energy: -38376.0 ( -132.79 by residue)
QMean score : 0.215
(partial model without unconserved sides chains):
PDB file :
Tito_3TND.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TND-query.scw
PDB file :
Tito_Scwrl_3TND.pdb
: