Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKKYRIKKNDDFQKVFRRGKSFANRQFVVYTLKQEGSNHFRIGLSVSKKIGNAVCRNRIKRYIRQSFHELESQINPENEYIIIARKPAANMDFHEVKKSLIHVLKVGRVLKQKPNNSK
1PFS Chain:A ((1-78))
------MNIQITFTDSVRQGTSAKGNPYTF----QEGFLHLE------DKPHPLQCQFFVESVIPAGSYQVPYRINVNNG------RPELAFDFKAMKRA-------------------
General information:
TITO was launched using:
RESULT:
Template:
1PFS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 16769 for 439 contacts (38.2/contact) +
2D Compatibility (PS) -7361 + (NN) 5954 + (LL) 3596
1D Compatibility (HY) -3600 + (ID) 900
Total energy: 14458.0 ( 32.93 by residue)
QMean score : -0.010
(partial model without unconserved sides chains):
PDB file :
Tito_1PFS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PFS-query.scw
PDB file :
Tito_Scwrl_1PFS.pdb
: