Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTLYIIANPHAGNKNASTIVGKIQELYHTEDISVFYTEQKDDEKKQ---------------V-INILRSFKESDHLMIIGGDGTLSKVMTYLP-QHIPCAYYPVGSGNDFARALKIPNLKETLTAIQTERLKEINCFIYDKGLILNSLDLGFAAYVVWKASNSKIKNILNRYRLGKITYIVIAIKSLLHSSKVQVLVEGETGQQIKLNDLYFFALANNTYFGGGITIWPKASALTAELDMVYAKGHTFLKRLSILLSLVFKRHTTSKSIKHQTFKAMTVYFPKNSLIEIDGEIVELDQISLKCQKRYLYM |
| 3PFN Chain:A ((39-165)) | KSVLVIKKMRDASL--LQPFKELCTHLMEENMIVYVEKKVLEDPAIASDESFGAVKKKFCTFREDYDDISNQIDFIICLGGDGTLLYASSLFQGSVPPVMAFHLGSLGFLT-PFSFENFQSQVTQVIEGNAAVVLRSRLKVRVVKQAMQYQVLNEVVIDRGPSSYLSNVDVYLDGHLITTVQGDGVIVSTPTGSTAYAAAAGASMIHPNVPAIMITPICPHSLSFRPIVVPAGVELKIMLSPEARNTAWVSFDGRKRQEIRHGDSISITTSCYPLPSICVRDPVSDWFESLAQCLHH------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3PFN.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -69487 for 756 contacts (-91.9/contact) +
2D Compatibility (PS) -11991 + (NN) -5016 + (LL) 1108
1D Compatibility (HY) -7600 + (ID) 750
Total energy: -93736.0 ( -123.99 by residue)
QMean score : 0.624
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