Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNNQLIYTGKAKDIYSTKDENVIRTVYKDQATMLNGARKETIDGKGALNNQISSLIFEKLNMAGVVTHYIEQISKNEQLNKKVDIIPLEVVLRNVTAGSFSKRFGVEEGRVLETPIVEFYYKNDDLNDPFINDEHMKFLGIVNDEEIAYLKGETRRINELLKDWFAQIGLNLIDFKLEFGFDKDGKIILADEFSPDNCRLWDAEGNH-MDKDVFRRDLGSLTDVYQVVLEKLIAL
2YWV Chain:B ((7-236))
--QQLLYEGKAKKIYATDEPDVLWVEYKDSATAFNGEKKATIAGKGRLNNEISSLLFLKLREAGIANHFIEKLSPTEQLVRRVTIIPLEVVVRNVVAGSLAKRIGLEEGTPLEAPLVEFYYKNDDLGDPLLLEDHIFILKLASREEVAALKQAALAVNDVLRLHFAERNVRLIDFKLEFGRTADGAILLADEISPDTCRLWDAKTNEKLDKDVFRRDLGSLTDAYEVILQRLGGE
General information:
TITO was launched using:
RESULT:
Template:
2YWV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -58440 for 1792 contacts (-32.6/contact) +
2D Compatibility (PS) -24497 + (NN) -4427 + (LL) 128
1D Compatibility (HY) -25200 + (ID) 6650
Total energy: -119086.0 ( -66.45 by residue)
QMean score : 0.460
(partial model without unconserved sides chains):
PDB file :
Tito_2YWV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2YWV-query.scw
PDB file :
Tito_Scwrl_2YWV.pdb
: