Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
---MIKIIVHAFINSGKIGVVEVLFATSDDKLLMTKMSEFQRHYPGDYLAIYD-LPLDTDLNKLSHYPSVAISKEDFHEEKANETNENS----------------------------------
1SSF Chain:A ((7-129))
NSFVGLRVVAKWSSNGYFYSGKITRDVGAGKYKLLFDDGYECDVLGKDILLCDPIPLDTEVTALSEDEYFSAGVVKGHRKESGELYYSIEKEGQRKWYKRMAVILSLEQGNRLREQYGLGPYE
General information:
TITO was launched using:
RESULT:
Template:
1SSF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -23617 for 505 contacts (-46.8/contact) +
2D Compatibility (PS) -8838 + (NN) 751 + (LL) 0
1D Compatibility (HY) -2000 + (ID) 650
Total energy: -34354.0 ( -68.03 by residue)
QMean score : 0.219
(partial model without unconserved sides chains):
PDB file :
Tito_1SSF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SSF-query.scw
PDB file :
Tito_Scwrl_1SSF.pdb
: