Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKNFKITRTHLEILSLIIIVVFGLSVFTLTTSSQGVLSYDGGKIKYVGSIVNHHMTGKGKL--TY--ENGDY-------YKG--DFVNGVFEGKGTFVSVHGWSYTGDFKKGQPDGQGRLNAKNKKVYKGTFKQGIYQK
2C3Y Chain:B ((448-538))
--------------------------------AQGYFSYDSKKSG--GITISHLRFGEKPIQSTYLVNRADYVACHNPAYVGIYDILEGIKDG-GTFVLNSPWSSLEDMDKHLPSGIKRTIA-NKKLKFYNIDAVKIAT
General information:
TITO was launched using:
RESULT:
Template:
2C3Y.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 4432 for 371 contacts (11.9/contact) +
2D Compatibility (PS) -8464 + (NN) -3481 + (LL) 3792
1D Compatibility (HY) -3600 + (ID) 1650
Total energy: -8971.0 ( -24.18 by residue)
QMean score : -0.052
(partial model without unconserved sides chains):
PDB file :
Tito_2C3Y.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2C3Y-query.scw
PDB file :
Tito_Scwrl_2C3Y.pdb
: