Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MADKNRTFKLVGAGSSSTQEKIEKPALSFMQDAWRRLKKNKLAVVSLYLLALLLTFSLASNLFVTQKDANGFDSKKVTTYRNLPPKLSSNLPFWNGSIKYAGNTESTDAYKSQNVPEKVKYALGTDSLGRSVAKRIIVGIRISLLVAIAATFIDLIIGVT--YGLVSGFAGGRLDTLMQRIVEVISS---IPNLVIVTMLGLVLGNGITAIIISIAFTGWTSMSRQVRNLTLSYREREFVLAARSLGESPIKIAFKHILPNISGII-IVQIMMTIPSAIMYEAVLSAINLGVKPPTASLGSLISDAQENLQYYPYQVILPALALVMISLAFILLGDGLRDAFDPKSSDE--- |
| 4TQU Chain:N ((2-284)) | ------------------LATPFYSRSDRIFGIVNAVLLGIFALCALYPIIYIFSMSI-----------------------------SSGAAVTQGRVFLLPVDIDFSAYGRVLH-----------------DKLFWTSYANTIFYTVFGVVTSLIFIVPGAYALSKPRIRGRRVFGFIIAFTMWFNAGMIPFFLNMRDLGLL--DNRFGILIGFACN---AFNIILMRNYFESISASFEEAARMDGANDLQILWKVYIPLAKPALATITLLCAISRWNGYFWAMVLLRAEEKIPLQVYLKKTIVDLNVNEEFAGALLTNSYSMETVVGAIIVMSIIPVIIVYPVVQKYFTK |
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General information:
TITO was launched using:
| RESULT:
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Template: 4TQU.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -144918 for 1860 contacts (-77.9/contact) +
2D Compatibility (PS) -28831 + (NN) -8137 + (LL) 2812
1D Compatibility (HY) -14800 + (ID) 2000
Total energy: -195874.0 ( -105.31 by residue)
QMean score : 0.203
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