Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDNCIFCKIISGEIPSSKVYEDDEVLAFLDITQTTTGHTLLIPKKHVRNVLEMDEKTAQITFERLPKVARAVQAATKAKGMNIINNNEEIAGQTVFHAHVHLVPRFDESDGIKIHYTTHEPDF--EALAKLAKEIRKEIQL
1Y23 Chain:B ((5-142))
-ENCIFCKIIAGDIPSAKVYEDEHVLAFLDISQVTKGHTLVIPKTHIENVYEFTDELAKQYFHAVPKIARAIRDEFEPIGLNTLNNNGEKAGQSVFHYHMHIIPRYGKGDGFGAVWKTHADDYKPEDLQNISSSIAKRLAS
General information:
TITO was launched using:
RESULT:
Template:
1Y23.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -54763 for 865 contacts (-63.3/contact) +
2D Compatibility (PS) -14617 + (NN) -6833 + (LL) 208
1D Compatibility (HY) -14400 + (ID) 3450
Total energy: -93855.0 ( -108.50 by residue)
QMean score : 0.423
(partial model without unconserved sides chains):
PDB file :
Tito_1Y23.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1Y23-query.scw
PDB file :
Tito_Scwrl_1Y23.pdb
: