Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-MSDKKTFEENLQELETIVSRL-ETGDVALEDAIAEFQKGMLISKELQRTLKEAEETLVKVMQADGTEVEMDT
1VP7 Chain:A ((13-80))
ARPLPQDFETALAELESLVS-AMENGTLPLEQSLSAYRRGVELARVCQDRLAQAEQQVKVLEGDLLRPL----
General information:
TITO was launched using:
RESULT:
Template:
1VP7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 16378 for 332 contacts (49.3/contact) +
2D Compatibility (PS) -7578 + (NN) -8011 + (LL) 528
1D Compatibility (HY) 2400 + (ID) 600
Total energy: 3117.0 ( 9.39 by residue)
QMean score : 0.367
(partial model without unconserved sides chains):
PDB file :
Tito_1VP7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VP7-query.scw
PDB file :
Tito_Scwrl_1VP7.pdb
: