Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKILIVDDEKPISDIIKFNLTKEGYETATAFDGREALVQYAEFQPDLIILDLMLPELDGLEVAKEVRKTSHIPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTENIETAVAEESAQNASSDITIGELQILPDAFIAKKRGEEIELTHREFELLHHLATHIGQVMTREHLLETVWGYDYFGDVRTVDVTVRRLREKIEDTPGRPEYILTRRGVGYYMKSYE
4KNY Chain:B ((3-223))
MANVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR----HSATTAPDPLVKFSDVTV-DLA----ARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFML--
General information:
TITO was launched using:
RESULT:
Template:
4KNY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -86916 for 1566 contacts (-55.5/contact) +
2D Compatibility (PS) -23474 + (NN) -11746 + (LL) 572
1D Compatibility (HY) -17200 + (ID) 4250
Total energy: -143014.0 ( -91.32 by residue)
QMean score : 0.494
(partial model without unconserved sides chains):
PDB file :
Tito_4KNY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4KNY-query.scw
PDB file :
Tito_Scwrl_4KNY.pdb
: