Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIEIAVLIIAIAFVVLVLGILFVLKKVSETIEETKQTIKVLTSDVNVTLYQTNEILAKANVLVDDVNGKVSTIDPLFVAIADLSESVSDLNLQARHIGQKASSATSSVTKAGSALAIGKAASKIFRKKGDKK
3J2W Chain:E ((25-44))
-----GLIVAVAALILIVVLCVSFSRH---------------------------------------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3J2W.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -9940 for 70 contacts (-142.0/contact) +
2D Compatibility (PS) -2057 + (NN) -1300 + (LL) 8424
1D Compatibility (HY) -4000 + (ID) 250
Total energy: -9123.0 ( -130.33 by residue)
QMean score : 1.033
(partial model without unconserved sides chains):
PDB file :
Tito_3J2W.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3J2W-query.scw
PDB file :
Tito_Scwrl_3J2W.pdb
: