Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MDIFSAIDSKFWASIMENPWMILIHLMDIIIVAVLIYKFIKALAGTKIMSLIQGVILFIIIRFVSEWIGLTTITFLMNQIVTYGVIAGVVIFAPEIRTGLEKFGRTPQLFTQRSQLSSDEKLVDALVKAVAYMSPRKIGALISIERTQTLQEYIATGIPLDADISSELLINIFIPNTPLHDGAVIVKDKKIATACSYLPLSESSSISKEFGTRHRAAIGLSENSDALTVIVSEETGGISVALKGEFLHDLSKDSFEAILRTQLIQNQEENSKLAWYNQLLRRK |
| 3SK9 Chain:A ((4-260)) | ----SMAALALWAKSGNPFHPLLAHMLDTAAVALAVLRMEPPRTRALYAEDWG-----------------LPEEGALAWAAALVGLHDLGKASPVFQAWVAHGVFTELFLRRLLKEKGLP---ERAANDLAAALGAHHGFPANAEEKSRARRHLRTEDPLWKEARRWLLEEVFRRL-------------------GAPLPPARPEAVLRVMALASFADWVASDPSLFPYGRDPRRGDYLKEALRLAQEALNRLGWPAFAKAQRREFGELFPYI---------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3SK9.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -113714 for 1948 contacts (-58.4/contact) +
2D Compatibility (PS) -23679 + (NN) -719 + (LL) 5288
1D Compatibility (HY) 6400 + (ID) 1250
Total energy: -127674.0 ( -65.54 by residue)
QMean score : 0.236
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