Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMKLALITDTSAYLPEAIENHEDVYVLDIPIIIDGKTY-IEGQNLTLDQYYDKLAA-SKELPKTSQPSLAELDDLLCQLEKEGYTHVLGLFIAAGISGFWQNIQFLIEEH----PNLTIAFPDTKITSAPQGNLVRNALMCSREGMDFDVIVNKIQSQIEKIEGFIVVNDLNHLVKGGRLSNGSAIIGNLLSIKPVLHFNEEGKIVVYEKVRTEKKALKRLAEIVKEM-T--ADGEYDIAIIHSRAQDKAEQLYNLLAKAGLKD--DLEIVSFGGVIATHLGEGAVAFGITPKN
3NYI Chain:A ((4-292))-MYKIVSDSACDLSKEYLEKHDVTIVPLSVSFDGETYYRDGVDITRDECYQRMVDDPKLFPKTSLPSVESYADVFRSFVEQG-FPVVCFTITTLFSGSYNSAINAKSLVLEDYPDANICVIDSKQNTVTQALLIDQFVRMLEDGLSFEQAMSKLDALMASARIFFTVGSLDYLKMGGRIGKVATAATGKLGVKPVIIMK-DGDIGLGGIGRNRNKLKNSVLQVAKKYLDENNKDNFIVSVGYGYDKEEGFEFMKEVESTLDVKLDSETNVAIGIVSAVHTGPYPIGLGVIRKY


General information:
TITO was launched using:
RESULT:

Template: 3NYI.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -135932 for 2412 contacts (-56.4/contact) +
2D Compatibility (PS) -31216 + (NN) -15933 + (LL) 404
1D Compatibility (HY) -12800 + (ID) 2900
Total energy: -198377.0 ( -82.25 by residue)
QMean score : 0.518

(partial model without unconserved sides chains):
PDB file : Tito_3NYI.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3NYI-query.scw
PDB file : Tito_Scwrl_3NYI.pdb: