Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIVVPVMPRS----LEEAQEIDLSKFDSVDIIEWRADALPK-DDIINVAPAIFE-KFAGHEI--IFTLRTTREGGNIVLSDAEYVELIQKINSIYNPDYIDFEYFSHKEVFQEMLEFPN-----LVLSYHNFQETP--ENIMEIFSELTALAPRVVKIAVMPKNEQDVLDVMNYTRGFKTINPDQVYATVSMSKIGRISRFAGDVTGSSWTFAYLDSSIAPGQITISEMKRVKALLDAD
3JS3 Chain:D ((21-253))
-KICVPIIGKNKKDIIKEAKEL---KDACLDIIEWRVDFFENVENIKEVKEVLYELRSYIHDIPLLFTFRSVVEGGEKLISRDYYTTLNKEISNTGLVDLIDVELFMGDEVIDEVVNFAHKKEVKVIISNHDFNKTPKKEEIVSRLCRMQELGADLPKIAVMPQNEKDVLVLLEATNEMFKIYADRPIITMSMSGMGVISRLCGEIFGSALTFGAAKSVSAPGQISFKELNSVLNLLHKS
General information:
TITO was launched using:
RESULT:
Template:
3JS3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -96716 for 1749 contacts (-55.3/contact) +
2D Compatibility (PS) -24548 + (NN) -16511 + (LL) 280
1D Compatibility (HY) -21200 + (ID) 4200
Total energy: -162895.0 ( -93.14 by residue)
QMean score : 0.450
(partial model without unconserved sides chains):
PDB file :
Tito_3JS3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3JS3-query.scw
PDB file :
Tito_Scwrl_3JS3.pdb
: